FastQCFastQC Report
Wed 8 May 2024
EGAF00007963543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497611
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28320.5691192517850289No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24710.4965726239974598No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24640.4951659026830195No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15800.3175170966879751No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14370.28877978983583563No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11860.23833878270375855No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11810.23733398176487255No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11460.23030037519267058No Hit
TCTGACGAACGCGGCCCGATCGTTAAAGCAC9890.19874962571165025No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9710.19513234233166069No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9590.19272082007833427No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8930.17945744768503913No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8770.17624208468060393No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8410.16900751792062474No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8330.16739983641840714No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8070.16217487153619994No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7720.155141264963998No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7590.1525287825228944No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7400.14871053895512762No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7260.1458970963262468No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6900.13866252956626762No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6840.13745676843960444No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6730.13524620637405524No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6410.12881548036518486No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6380.12821259980185323No Hit
CTGAAGGCGGTAAGCTCCAACCTGGACCTGT6220.12499723679741806No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5830.11715978947410728No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5770.11595402834744409No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5590.1123367449674545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)