FastQCFastQC Report
Wed 8 May 2024
EGAF00007963545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502243
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29320.5837811577264391No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12930.2574451012756773No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11120.22140676923321978No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9720.1935318162722029No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8150.1622720475944911No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7580.15092295960321994No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7270.14475064859042336No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7010.1395738716119488No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6450.12842389042754204No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6060.1206587249598302No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5270.10492928721754212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)