FastQCFastQC Report
Wed 8 May 2024
EGAF00007963547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465201
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64671.3901517838525712No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11120.23903645950890043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10690.22979314317896996No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8390.18035214885608586No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7620.16380016380016382No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6980.15004266972770908No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6420.13800486241431123No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6140.1319859587576123No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6100.13112611537808389No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5340.11478909116704392No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5270.11328436525286918No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4890.10511585314734921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)