FastQCFastQC Report
Wed 8 May 2024
EGAF00007963549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473717
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67781.4308120671202427No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11620.24529413130624403No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10430.22017364797970096No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8830.18639820821292039No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8240.17394351479892003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7340.15494482993010594No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6600.1393236890379699No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6410.13531285556566472No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6280.13256860108461382No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5200.10977017924203691No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA4830.1019596087959689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)