FastQCFastQC Report
Wed 8 May 2024
EGAF00007963550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437226
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17010.38904365248178285No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13740.3142539556202055No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13170.3012172194700224No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12500.2858933366268246No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11680.2671387337441049No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10840.2479267015227823No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9570.21887993852149687No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9040.20675806104851951No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9040.20675806104851951No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8290.18960446085091004No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8040.18388659411837358No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7730.1767964393700283No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7320.16741913792866847No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6850.15666954847149986No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6720.1536962577705809No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6250.1429466683134123No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6070.138829804265986No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5640.12899507348602327No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5590.12785150013951593No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG4700.10749589457168603No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4660.1065810358944802No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC4630.10589489188657583No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4560.10429388920146561No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4480.10246417184705393No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4410.10086316916194371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)