FastQCFastQC Report
Wed 8 May 2024
EGAF00007963551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437226
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29800.6815697145183498No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25670.5871105560968469No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17590.40230910330126757No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16830.3849267884343566No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13740.3142539556202055No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11200.2561604296176348No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10220.23374639202609176No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10070.23031567198656988No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9850.22528394926193776No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8580.1962371862606524No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8260.18891831684300567No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7960.18205687676396187No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7490.1713072873067933No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7220.16513199123565386No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7100.16238741520403635No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6530.14935067905385316No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6500.1486645350459488No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6260.14317538298271373No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5800.1326545081948466No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5610.12830892947811887No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5230.11961777204466341No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5170.11824548402885465No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT5090.11641576667444298No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4850.11092661461120792No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4800.10978304126470063No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4800.10978304126470063No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4720.10795332391028896No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4650.10635232122517874No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4550.10406517453216416No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4540.10383645986286269No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4480.10246417184705393No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4430.10132059850054662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)