FastQCFastQC Report
Wed 8 May 2024
EGAF00007963552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402559
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16140.40093501822093164No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12800.3179658137068107No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12100.3005770582697195No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11390.2829398920406698No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11240.27921373016129314No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10550.26207338551616033No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9670.24021323582381712No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8470.21040394078880362No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8390.20841665445313606No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8250.20493890336571782No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7670.19053107743212797No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7460.1853144508010006No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6300.1564987989338209No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6170.15326945863836108No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6110.1517789938866104No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5690.1413457406243557No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5630.13985527587260502No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5450.13538388161735299No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5050.12544744993901513No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC4410.10954915925367462No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4340.10781028370996551No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4290.10656822975017327No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4060.10085478153512903No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4040.10035795995121212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)