FastQCFastQC Report
Wed 8 May 2024
EGAF00007963553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402559
Total Bases12.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55511.3789283061613329No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27480.6826328563018091No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16450.40863575277164343No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15360.3815589764481728No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12220.3035579877732208No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11150.27697803303366714No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10230.2541242401734901No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9160.2275442854339364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9140.2270474638500195No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8620.2141301026681803No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7760.19276677455975397No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7530.18705332634470972No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6780.16842251694782628No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6530.16221224714886515No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6320.15699562051773777No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6110.1517789938866104No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5760.1430846161680648No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5750.14283620537610636No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5370.1333965952816854No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5350.1328997736977685No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4600.1142689643008851No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4590.11402055350892663No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4580.1137721427169682No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT4530.11253008875717596No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4490.11153644558934217No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4380.10880392687779927No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4210.10458094341450569No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4180.10383571103863036No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4170.10358730024667193No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4130.10259365707883812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)