FastQCFastQC Report
Wed 8 May 2024
EGAF00007963555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438145
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30880.7047895103219254No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27470.6269613940590444No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18190.4151593650503829No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16680.3806958883474649No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13270.3028677720845839No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11880.27114311472229513No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10790.24626550571157949No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9910.22618083054696506No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9740.22230083648107363No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8380.19126088395394217No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8370.19103264900888975No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8330.19011970922868No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7950.1814467813166874No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7380.1684373894486985No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7090.1618185760421778No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6700.15291741318513277No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6290.14355978043798287No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5970.13625626219630488No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5660.12918097889967933No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT5610.12803980417441713No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5420.12370334021842085No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5420.12370334021842085No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5320.12142099076789648No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4980.1136610026361136No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4980.1136610026361136No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4950.11297629780095629No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4940.11274806285590387No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4850.11069394835043195No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4810.10978100857022219No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4710.1074986591196978No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4520.10316219516370152No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4450.10156455054833445No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4390.10019514087801984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)