FastQCFastQC Report
Wed 8 May 2024
EGAF00007963557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409843
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59151.4432355804539787No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28550.6966082133890295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16370.39942124179258887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15140.369409749587037No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12300.3001149220555188No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10620.25912361562842356No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9750.23789597480010638No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9630.23496802434102815No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9210.2247201977342543No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8180.19958862296049953No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7910.19300073442757348No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7710.18812081699577643No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6980.17030911836971718No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6870.1676251637822288No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6470.1578653289186347No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5970.14566553533914206No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5780.14102961377893486No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5600.1366376880903175No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5130.12516988212559443No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT4990.1217539399233365No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4970.12126594818015679No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4690.11443406377564092No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4670.11394607203246121No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4650.1134580802892815No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4530.11053012983020327No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4480.109310150472254No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4410.10760217937112505No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4350.10613820414158592No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4240.10345424955409754No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4160.10150228258137874No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4130.10077029496660918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)