FastQCFastQC Report
Wed 8 May 2024
EGAF00007963558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467119
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20970.44892200916682906No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20260.4337224561621343No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19270.41252871324009516No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15150.32432849017059895No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14010.29992357407855386No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13860.2967124009085479No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13230.28322547359452305No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13200.28258323896052184No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13140.28129876969251943No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12110.2592487139251454No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12020.25732201002314187No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10810.2314185464517607No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10420.22306949620974525No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10230.21900201019440443No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10090.21600491523573223No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9990.21386413312239494No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9780.20936849068438662No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9640.20637139572571442No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9530.20401653540104342No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9260.19823642369503272No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8770.18774659133968002No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8470.18132424499966818No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8360.17896938467499715No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8200.1755441332936575No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7170.15349407752628344No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6870.1470717311862716No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6820.14600134012960295No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6450.13808044631025498No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6290.1346551949289153No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6250.1337988820835804No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6160.13187217818157684No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5690.1218105022488916No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5690.1218105022488916No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5460.11688670338821584No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5290.11324737379554246No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5270.112819217372875No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5110.10939396599153534No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5110.10939396599153534No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5030.10768134030086551No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4950.10596871461019568No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4810.10297161965152349No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4720.10104491574951993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)