FastQCFastQC Report
Wed 8 May 2024
EGAF00007963559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467119
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27990.5992049135231066No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27220.5827208912504095No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26470.5666650254003798No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20950.44849385274416154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20890.44720938347615924No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19590.41937921600277445No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16550.3542994397573209No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15390.3294663672426084No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15010.3213313952119267No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14100.3018502779805574No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13860.2967124009085479No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13530.28964781993453487No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12740.2727356412391703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11540.24704625587912288No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11380.2436210044977832No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11200.2397675966937761No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11090.2374127363691051No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11070.23698457994643765No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10700.22906368612708966No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10550.22585251295708375No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9900.21193742922039135No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9890.21172335100905765No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9610.20572916109171327No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9350.2001631275970363No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9080.1943830158910256No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8190.17533005508232377No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7930.16976402158764684No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7720.16526837914963852No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7310.15649117248495564No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6770.1449309490729343No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6410.13722413346492007No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6330.13551150777425025No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6080.13015955249090702No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5830.1248075972075638No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5730.12266681509422651No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5670.12138234582622415No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5570.11924156371288686No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5390.11538815590887974No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5330.11410368664087737No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5100.10917988778020161No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4920.1053264799761945No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4840.10361385428552466No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA4820.10318569786285721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)