FastQCFastQC Report
Wed 8 May 2024
EGAF00007963560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434774
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19560.4498889078003745No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18690.42987851159452956No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18540.42642844328317697No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15310.35213697231205177No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13050.3001559430876731No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12990.2987759157631321No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12160.2796855377736479No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12070.2776154967868364No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11790.27117536927231156No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11220.25806510968917185No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11190.25737509602690134No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10130.2329946132933432No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9830.22609447667063806No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9610.22103437648065433No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9140.21022416243841627No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9020.20746410778933422No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8930.2053940668025227No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8760.20148398938298978No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8570.19711390285527655No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8280.19044377078666158No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8270.19021376623257139No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7630.17549347477080046No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7590.1745734565544398No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7580.17434345200034962No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6730.15479306490268507No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6320.14536287818498805No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6270.1442128554145372No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6090.14007277344091415No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6070.13961276433273379No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6000.13800273245410258No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5750.13225261860184834No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5650.1299525730609466No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5450.12535248197914317No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5230.12029238178915944No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5230.12029238178915944No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5110.11753232714007736No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5070.1166123089237167No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4780.10994217685510173No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4640.10672211309783934No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4630.10649210854374916No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4610.10603209943556884No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4460.10258203112421627No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4450.10235202657012608No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC4450.10235202657012608No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4440.10212202201603592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)