FastQCFastQC Report
Wed 8 May 2024
EGAF00007963562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470124
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20960.44583982098340014No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20600.43818226680620426No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19620.41733670265717127No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15490.329487539457675No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13810.29375228663076125No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13770.29290144727773954No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13640.2901362193804188No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13530.2877964111596089No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12970.2758846602173044No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12450.26482374862802155No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12030.2558899354212931No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11180.23780959916958078No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11060.23525708111051552No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10440.22206907113867833No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10150.2159004858292706No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9850.20951919068160743No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9820.20888106116684108No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9800.20845564149033022No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9600.20420144472522145No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9570.2035633152104551No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9500.20207434634266705No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8560.18207962154665577No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8240.17527290672248172No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7870.16740264270703048No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7310.15549089176472589No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6780.14421727033718765No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6700.14251559163114413No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6600.14038849324858974No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6590.1401757834103343No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6420.13655971615999185No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6380.13570887680697008No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6020.12805132262977428No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6000.1276259029532634No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5700.12124460780560023No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5610.11933021926130129No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5600.11911750942304583No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5520.11741583071700232No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5390.11465060281968162No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5010.10656762896597494No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4960.10550407977469774No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4780.10167530268609985No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4740.10082446333307808No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4730.10061175349482265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)