FastQCFastQC Report
Wed 8 May 2024
EGAF00007963563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470124
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27860.592609609379653No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27790.591120640511865No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27720.5896316716440769No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21500.4573261522491938No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20940.44541440130688925No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19550.4158477337893833No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16730.35586355940134945No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15250.32438250333954444No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15090.32097914592745747No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14180.30162255064621246No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13780.2931141571159949No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13680.29098705873344055No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13330.28354221439450017No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12610.2682271060401086No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12160.25865516331861377No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11450.24355276480247764No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11450.24355276480247764No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10900.2318537236984285No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10750.2286630761245969No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10350.22015468259437934No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10200.21696403502054776No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9850.20951919068160743No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9780.20803022181381933No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9410.2001599577983681No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9080.1931405331359386No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8370.17803813461980245No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8290.17633645591375893No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7850.1669772230305196No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7790.165700964000987No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6780.14421727033718765No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6460.1374105555130136No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6330.13464532761569287No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5900.125498804570709No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5880.12507338489419814No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5790.12315899634989917No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5610.11933021926130129No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5290.11252350443712723No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5090.10826930767201845No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5060.10763117815725212No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4940.10507866009818687No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4920.10465324042167598No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4870.1035896912303988No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4860.10337698139214334No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4800.10210072236261072No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA4770.1014625928478444No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4720.1003990436565672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)