FastQCFastQC Report
Wed 8 May 2024
EGAF00007963564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441417
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19210.43518940140502066No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18940.4290727362108845No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18480.41865175106531916No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13950.31602770169703476No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13430.3042474576194392No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13380.30311474184274734No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13260.3003962239786868No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13230.2997165945126717No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12390.2806869694642481No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11920.2700394411633444No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11470.2598449991731175No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10350.23447216577521934No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10240.2319801910664972No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10110.2290351300470983No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9820.2224653785422854No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9540.21612217019281085No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8890.20139686509581642No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8850.20049069247446294No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8780.19890489038709427No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8750.19822526092107914No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8420.19074933679491274No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7910.17919563587265555No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7910.17919563587265555No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7850.1778363769406253No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6910.15654132033881796No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6260.1418160152418235No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6230.14113638577580837No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6210.1406832994651316No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6140.13909749737776297No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5950.13479317742633382No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5870.13298083218362683No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5760.13048885747490468No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5760.13048885747490468No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5280.11961478601866261No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5220.11825552708663235No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5200.11780244077595561No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5030.11395120713520322No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4990.1130450345138497No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4790.1085141714070822No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC4720.10692836931971356No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4550.10307713567896118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)