FastQCFastQC Report
Wed 8 May 2024
EGAF00007963567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505387
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54951.0872855851060672No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29900.5916258233789156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21250.4204698577525738No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17330.34290553575774607No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13060.258415827870523No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12430.24595013326421136No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12010.23763967019333698No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12000.23744180202498283No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11840.23427591133131637No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11340.22438250291360878No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT11120.22002940320981743No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10820.21409335815919284No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10180.2014297953845271No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9930.19648309117567328No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9840.19470227766048592No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9630.19054704612504872No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9500.18797475993644475No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9150.18104937404404942No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9030.17867495602379957No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8380.16581352508077968No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8280.16383484339723817No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7660.1515670169592807No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7380.14602670824536446No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7120.14088213586815648No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7020.13890345418461497No Hit
GACGCCGCGTCTTCTTCTTCCGCGGGTCAGT6770.13395674997576115No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6760.133758881807407No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6310.12485481423147014No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6220.12307400071628277No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6130.12129318720109539No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5680.11238911962515855No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5300.10487012922770075No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5280.10447439289099246No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5270.1042765247226383No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5190.10269357937580507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)