FastQCFastQC Report
Wed 8 May 2024
EGAF00007963569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467400
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64821.3868207103123662No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51101.0932819854514335No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18950.40543431750106973No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16180.34617030380830127No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11310.24197689345314505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11250.2406931964056483No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10990.23513050919982884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10770.23042362002567396No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10610.2270004278990158No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10460.22379118528027386No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9860.21095421480530596No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT9530.20389388104407358No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9450.20218228498074453No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9040.19341035515618313No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8980.19212665810868634No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8760.18741976893453144No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8660.18528027385537013No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8650.18506632434745401No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8380.17928968763371844No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8160.17458279845956354No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7800.1668806161745828No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6760.1446298673513051No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6540.13992297817715021No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6480.1386392811296534No Hit
GACGCCGCGTCTTCTTCTTCCGCGGGTCAGT6470.13842533162173726No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6390.1367137355584082No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5810.12430466409927257No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5760.12323491655969192No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5740.12280701754385966No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5530.11831407787762087No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4900.10483525887890457No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4710.10077021822849808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)