FastQCFastQC Report
Wed 8 May 2024
EGAF00007963573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485897
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29590.6089767996097939No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22470.4624436866249432No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19990.41140406300100635No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18380.378269468632241No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15900.3272298450083042No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12820.2638419253463183No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11010.2265912322982031No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10080.20745137343922684No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9910.20395268956177956No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9470.19489727246721014No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7980.16423233730605458No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7400.15229565113594035No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6400.13171515773919162No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6250.12862808372967935No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5330.10969402980467054No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5180.10660695579515823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)