FastQCFastQC Report
Wed 8 May 2024
EGAF00007963575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452987
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65851.4536841013097506No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20670.45630448555918823No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19750.43599485194939375No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16750.3697677858304984No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15570.34371847315706633No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11580.2556364752189357No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9970.2200946164017952No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9890.21832856130529132No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9050.1997849827920007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8790.19404530372836307No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7540.16645069284549005No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.15828268802415962No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5780.12759748072240482No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5720.12627293940002693No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5630.12428612741646008No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4560.10066514050072078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)