FastQCFastQC Report
Wed 8 May 2024
EGAF00007963577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489355
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31520.6441131693760154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23150.4730716964167118No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20930.42770585771066No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19590.40032287398718724No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16400.33513502467533796No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13820.2824125634764128No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11400.23295971227432027No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11060.2260117910310511No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9880.2018984173044109No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9460.19331569106272542No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8090.1653196554648466No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7660.15653257859835906No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6330.12935394549968837No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6150.12567563425325173No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5590.11423199926433776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)