FastQCFastQC Report
Wed 8 May 2024
EGAF00007963578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459110
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG19600.4269129402539696No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16410.3574306811003899No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12960.28228529110670647No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11810.2572368277754786No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9820.21389209557622357No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9450.2058330247653068No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9280.20213020844677748No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8990.19581363943281566No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8440.1838339395787502No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8330.1814379996079371No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7180.1563895362767093No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6770.14745921456731503No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5610.12219293851146786No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5320.11587636949750606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)