FastQCFastQC Report
Wed 8 May 2024
EGAF00007963579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459110
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68331.4883143473241707No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21930.4776633050902834No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19470.42408137483391783No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17320.37725163904075276No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14840.3232340833351484No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12490.272048093049596No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9390.20452614841759056No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9210.20060551937444185No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9200.20038770664982247No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8960.19516020125895756No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7600.16553767071072292No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7300.15900328897214175No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5960.12981638387314587No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5780.12589575482999715No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5280.11500511859902855No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4680.10193635512186622No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4660.10150072967262747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)