FastQCFastQC Report
Wed 8 May 2024
EGAF00007963581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502370
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32260.6421561797081832No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11170.22234607958277766No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9760.19427911698548878No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8820.1755678085872962No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7830.15586121782749765No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6790.13515934470609312No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6250.12441029520074845No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5390.10729143858112546No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5250.1045046479686287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)