FastQCFastQC Report
Wed 8 May 2024
EGAF00007963583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465869
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69061.482390972569542No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10870.2333273946109314No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9310.1998415863687002No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8250.177088408973338No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7560.1622773784046588No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6360.1365190643721733No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5300.11376588697681107No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4960.10646769800094018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)