FastQCFastQC Report
Wed 8 May 2024
EGAF00007963585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506396
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33110.6538361282474585No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11970.23637627469411288No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10200.20142339196992076No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8940.17654167884422467No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8350.16489071793616064No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7060.13941658306937654No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6280.1240136178010885No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5220.10308138294931239No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5120.10110664381235239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)