FastQCFastQC Report
Wed 8 May 2024
EGAF00007963587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475598
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71041.4936984596234635No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11710.24621634237318074No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9750.20500506730474055No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8260.17367608778842636No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7440.15643463597407894No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6220.13078271986004988No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5850.12300304038284433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)