FastQCFastQC Report
Wed 8 May 2024
EGAF00007963589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461570
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29550.6402062525727409No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8670.18783716446042853No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5470.11850856858114694No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5430.11764196113265595No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5000.10832593106137747No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4950.10724267175076369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)