FastQCFastQC Report
Wed 8 May 2024
EGAF00007963591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427654
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63001.4731535306579617No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8120.18987312172924842No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5730.13398682112174795No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5150.12042445528394449No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4810.11247410289626661No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4530.1059267538711201No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4510.10545908608360964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)