FastQCFastQC Report
Wed 8 May 2024
EGAF00007963593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464235
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30920.666041983047379No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9720.2093767165336521No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6100.13139896819498745No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5900.12709080530334851No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5630.12127478539963596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5360.1154587654959234No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4730.10188805238726076No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4660.10038019537518715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)