FastQCFastQC Report
Wed 8 May 2024
EGAF00007963595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435399
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65791.5110278158654475No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8010.1839691868837549No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5380.12356482215163563No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5290.12149775263608782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5290.12149775263608782No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4770.10955468432403383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)