FastQCFastQC Report
Wed 8 May 2024
EGAF00007963598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451957
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33620.7438760767064123No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28730.6356799430034273No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16150.35733487920311No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13320.2947183028473948No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11880.2628568647017305No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11520.2548915051653144No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11200.247811185577389No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC11160.2469261456288983No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11010.2436072458220583No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10470.23165920651743419No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10220.22612770683936748No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9740.21550722745747936No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9440.2088694278437993No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9210.20378044813997792No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8850.1958150886035618No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8780.19426626869370317No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8730.19315996875808983No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8450.1869646891186551No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG8340.18453082926030573No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8020.17745050967238035No Hit
CTGCAGCTCGCGAGCGCTGATGTAACCATCGCCATCTTCATCGA7280.16107727062530283No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA6900.15266939111464145No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5960.1318709523251106No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5420.11992291302048647No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5350.11837409311062777No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5290.11704653318789177No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5230.11571897326515576No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5190.1148339333166651No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5150.1139488933681744No Hit
GATGTCACCCAGTTCGGTCAGCACATCTTTTTCCGGGTTTTCGT5070.11217881347119305No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG4930.10908117365147568No Hit
CAGTGGGTCACCCAGGGACAGCTGGCTGTTCACCTCTTTACGCA4830.10686857378024901No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4820.10664731379312632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)