FastQCFastQC Report
Wed 8 May 2024
EGAF00007963605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473826
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30560.644962496781519No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20070.4235732104190146No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14180.29926597527362364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12330.26022210684934977No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11700.2469260867913538No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11520.24312722391764066No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10360.21864566317593379No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10320.21780147142621975No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7140.15068822732395437No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6310.13317124851738826No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6140.1295834335811036No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.126417714519676No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4960.10467977696453973No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4890.10320244140254017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)