FastQCFastQC Report
Wed 8 May 2024
EGAF00007963607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441238
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64601.4640624787529632No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18700.4238075596390157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12290.27853448705687184No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10390.23547382591707877No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10390.23547382591707877No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10320.23388738050666535No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9460.2143967654644432No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9170.20782434876415903No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5910.1339413196506194No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5590.12668899777444373No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5390.12215629660183394No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5040.1142240695497668No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4650.10538530226317769No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4630.1049320321459167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)