FastQCFastQC Report
Wed 8 May 2024
EGAF00007963609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475589
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31720.6669624402582902No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20340.4276802028642378No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13960.2935307587013156No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12160.25568295313810874No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11660.24516967381499571No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11490.2415951588451373No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10660.22414311516876967No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10520.22119939695829802No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7240.15223228459867658No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6340.13330838181707313No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.12594908629089402No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5980.12573882070443176No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4770.10029668474249825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)