FastQCFastQC Report
Wed 8 May 2024
EGAF00007963611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448039
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67631.5094668098089676No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18370.4100089501137178No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12630.2818951028816688No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11030.24618392595287467No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10950.24439836710643492No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10530.23502418316262647No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10490.23413140373940663No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10150.22654277864203784No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6410.14306790257098154No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6370.1421751231477617No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5590.12476592439497455No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5560.12409633982755966No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4820.10757992049799235No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4750.10601755650735763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)