FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007963615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456787
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66321.451880197991624No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18590.40697305308601167No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17240.37741879694474667No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12740.2789046098071968No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC11260.24650438825973595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11110.24322058202181762No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8300.18170394516481425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8260.18082826350136935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7950.17404173060967146No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7230.1582794606676635No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7080.15499565442974517No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6800.14886588278563095No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5640.12347111454572919No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5630.12325219412986797No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5540.12128191038711697No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4980.10902236709888853No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4920.10770884460372121No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG4700.10289259545477433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)