FastQCFastQC Report
Wed 8 May 2024
EGAF00007963628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505545
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16640.3291497294998467No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12970.25655480718828194No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10940.21640012263992328No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9460.18712478612190803No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7190.14222274970576307No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6130.12125527895637382No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6120.12105747262854938No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5400.10681541702519062No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5400.10681541702519062No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5400.10681541702519062No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5340.10562857905824408No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5270.1042439347634731No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5140.10167245250175554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)