FastQCFastQC Report
Wed 8 May 2024
EGAF00007963629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505545
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32160.6361451502833576No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17090.3380510142519459No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16190.3202484447477475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11110.2197628302129385No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10630.21026812647736598No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8650.17110247356812947No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7530.1489481648517936No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7460.1475635205570226No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6670.13193682065889287No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6210.12283772957896924No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5880.11631012076076314No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5850.11571670177728986No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5780.11433205748251887No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5730.11334302584339673No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5650.11176057522080131No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5320.10523296640259522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)