FastQCFastQC Report
Wed 8 May 2024
EGAF00007963631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466533
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67241.441269963753904No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14560.3120893913185134No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14490.310588961552559No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9990.21413276231263384No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9940.21306102676552355No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7970.17083464620937855No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7190.1541155716744582No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6620.141897786437401No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6250.13396694338878495No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5350.1146757035407999No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5340.11446135643137785No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5110.10953137291467056No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5040.10803094314871617No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4950.10610181916391767No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4850.10395834806969712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)