FastQCFastQC Report
Wed 8 May 2024
EGAF00007963632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507175
Total Bases22.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16750.33026075812096417No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13240.26105387686695913No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10800.21294425001232314No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8910.1756790062601666No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7000.13801942130428352No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6460.12737220880366737No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5700.11238724306205944No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5380.10607778380243506No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5340.105289101394982No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5330.10509193079311875No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5240.10331739537634939No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5170.10193720116330655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)