FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007963633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507175
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33650.6634790752698773No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17030.3357815349731355No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16560.3265145166855622No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10880.21452161482722926No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10100.19914230788189483No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9030.17804505348252575No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7910.1559619460738404No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6940.13683639769310396No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6880.13565337408192438No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5900.11633065509932469No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5850.11534480209000839No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5660.1115985606546064No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5620.11080987824715335No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5550.1094296840341105No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5450.10745797801547789No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5150.10154285995958001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)