FastQCFastQC Report
Wed 8 May 2024
EGAF00007963634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474773
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14550.3064622461681688No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11780.24811857456089542No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10100.21273324304457078No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8460.17819041942149194No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6390.1345906359460205No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5760.12132113662739878No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5720.12047862873415295No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5430.11437044650812073No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5380.11331731164156345No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5320.11205354980169471No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4930.1038390978425479No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4910.103417843895925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)