FastQCFastQC Report
Wed 8 May 2024
EGAF00007963635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474773
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69761.4693337658207186No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15190.319942372460102No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14840.312570428394201No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9830.20704631476516147No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9550.20114875951244068No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7880.1659740549694275No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7170.1510195398643141No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6390.1345906359460205No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6140.12932496161323412No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6090.12827182674667684No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5560.11710859716116966No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5500.11584483532130092No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5330.11226417677500616No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5270.11100041493513743No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5250.1105791609885145No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4840.10194345508274481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)