FastQCFastQC Report
Wed 8 May 2024
EGAF00007963637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480195
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31520.6564000041649747No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23710.49375774424973184No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17500.36443528150022386No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15180.31612157560990845No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10830.22553337706556711No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG10590.22053540749070688No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9900.20616624496298377No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9590.19971053426212268No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9230.19221357989983237No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8970.18679911286040046No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT7370.15347931569466572No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6890.14348337654494528No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6760.14077614302522934No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6700.1395266506315143No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6510.13556992471808327No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6100.12703172669436374No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6080.12661522922979207No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5730.1193265235997876No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5500.11453680275721322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5470.11391205656035568No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5080.10579035600120784No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5030.10474911233977864No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4890.10183363008777684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)