FastQCFastQC Report
Wed 8 May 2024
EGAF00007963638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445225
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16210.36408557470941655No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10320.2317929136953226No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9690.21764276489415463No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8840.19855129428940424No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT8760.19675444999719244No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8340.18732101746308044No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8060.18103206244033918No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7850.17631534617328318No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7530.16912796900443594No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG6450.14487057105957662No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6220.13970464371946767No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6110.13723398281767646No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5980.13431411084283226No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5780.12982200011230277No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5600.1257791004548262No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5470.12285922847998204No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5240.1176933011398731No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5160.1158964568476613No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4830.10848447414228762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)