FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007963639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445225
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64041.4383738559155483No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22070.49570441911393115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16640.373743612780055No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13310.2989499691167387No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9940.22325790330731654No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG9410.2113538098714133No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8870.19922511089898368No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8640.19405918355887472No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7950.1785614015385479No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7820.17564152956370374No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT6850.15385479252063564No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6300.14150148801167947No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5990.13453871637935877No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5870.13184344994104105No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5870.13184344994104105No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5630.12645291706440562No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5550.12465607277219383No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5440.1221854118704026No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5370.12061317311471728No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5200.1167948789937672No Hit

[OK]Adapter Content

Adapter graph