FastQCFastQC Report
Wed 8 May 2024
EGAF00007963640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484371
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17680.3650094658846215No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11450.2363890488902102No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10730.22152441000803103No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT10050.20748558439708406No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9690.20005326495599446No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9450.1950983853286014No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8970.1851886260738153No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8710.17982083981080618No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8210.169498173920404No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7530.155459348309457No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG7000.1445173224656307No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6680.1379108162957733No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6430.13274948335057218No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6340.1308914034902998No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6330.13068495017249174No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5900.12180745750674588No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5700.11767839115058498No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5560.11478804470127237No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5040.1040524721752541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)