FastQCFastQC Report
Wed 8 May 2024
EGAF00007963641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484371
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33220.6858379217583217No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24670.5093203350324441No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18130.37429986518598346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15050.310712243301106No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11680.24113747519979523No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG10920.22544702304638387No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10080.2081049443505082No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9410.19427257205736925No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9020.18622089266285552No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8850.18271118626011879No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT7660.1581432414409616No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7140.1474076689149433No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6850.14142052269851002No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6410.1323365767149561No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6320.13047849685468368No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6270.12944623026564347No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6170.12738169708756303No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6160.127175243769755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5520.1139622314300402No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5500.11354932479442412No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5170.10673636530675866No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5120.10570409871771844No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5010.10343311222182996No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4870.10054276577251735No Hit

[OK]Adapter Content

Adapter graph