FastQCFastQC Report
Wed 8 May 2024
EGAF00007963642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453121
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16970.374513650879125No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10390.2292985758770836No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10380.22907788427373701No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9260.20436042469892146No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9170.20237420026880237No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT8690.19178100330816714No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8340.18405679719103726No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7900.1743463666437883No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7790.17191875900697606No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7030.15514619715263694No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6410.14146331774514975No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG6390.1410219345384566No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6210.1370494856782184No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5970.13175288719790076No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5410.119394157410493No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5310.11718724137702732No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5150.11365617572348224No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5140.11343548412013568No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5080.11211133450005628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)